About SUBA3
The SubCellular Proteomic Database (SUBA3) houses large scale proteomic and GFP localisation sets from cellular compartments of Arabidopsis. It also contains precompiled bioinformatic predictions for protein subcellular localisations. A new dataset of protein-protein interactions has recently been added.
AT3G61360.1
Subcellular Localization

image/svg+xml
min: :max

.
SUBAcon:
mitochondrion 0.987

What's this?
Predictors Annotations GFP MS/MS PPI GFP Images
no data mitochondrion : 25888618
no data
no images
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G02420.1); Has 25235 Blast hits to 10240 proteins in 263 species: Archae - 1; Bacteria - 29; Metazoa - 217; Fungi - 376; Plants - 23987; Viruses - 0; Other Eukaryotes - 625 (source: NCBI BLink).
Coordinates (TAIR10) chr3:-:22704630..22706126
Molecular Weight (calculated) 56983.60 Da
IEP (calculated) 8.81
GRAVY (calculated) -0.22
Length 498 amino acids
Sequence (TAIR10)
(BLAST)
MLQKISSD SYRRLLAP VLSSSSSL SSTSINRT EIERITII INGHPFPN HPIQPILA KHIPLSSL SPEFVSEV LGRLFAAH SNGLKALE FFKYSLKS SKSSPTSD SFEKTLHI LARMRYFD QAWALMAE VRKDYPNL LSFKSMSI LLCKIAKF GSYEETLE AFVKMEKE IFRKKFGV DEFNILLR AFCTEREM KEARSIFE KLHSRFNP DVKTMNIL LLGFKEAG DVTATELF YHEMVKRG FKPNSVTY GIRIDGFC KKRNFGEA LRLFEDMD RLDFDITV QILTTLIH GSGVARNK IKARQLFD EISKRGLT PDCGAYNA LMSSLMKC GDVSGAIK VMKEMEEK GIEPDSVT FHSMFIGM MKSKEFGF NGVCEYYQ KMKERSLV PKTPTIVM LMKLFCHN GEVNLGLD LWKYMLEK GYCPHGHA LELLTTAL CARRRAND AFECSWQT VERGRCVS EPVYRMLE TSLSSNNE LKKLEELK EEIQKLHS FLPPPEIQ LM
See Also AIP APP Aramemnon pep2pro DBGET Inparanoid MASCP Gator MIPS MPSS Plus PPDB PlantSpecDB ProMEX Proteins Wiki SALK (inserts) SALK (signal) TAIR SwissProt

Citation

If you find this resource useful please cite one of the following publications:
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014)SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics. 1;30(23):3356-64. (Bioinformatics) (PubMed)
Tanz SK, Castleden I, Hooper CM, Vacher M, Small I; Millar, AH (2013) SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis. Nucleic Acids Res. 41: D1185-91 (Nucleic Acids Res.) (PubMed)